Scaffold Ga0224558_1003614

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1003614
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12688
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (73.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000072	Metagenome / Metatranscriptome	2651	Y
F001432	Metagenome / Metatranscriptome	696	Y
F085014	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100361412	F000072	N/A	MGTEQTIAEIEWLEHILAVPDMRPLSSSDLSAANRRHDEMNAHSPWFLLWQRYGICCRAESPILRLGRFEG
Ga0224558_100361416	F001432	AGGAGG	MSLTKEYVRDGKRQIIGSVTSGISDESAVVRDGDSKISGRTSERYDTTRDDHGNLFSINSPDPGLLIGNHNKK
Ga0224558_100361417	F085014	N/A	MPTDAIECPLCLGEGELKRTEVLDRLGVKDLARVAQLSAEEAFRLLLGKHKDDQQSVWLRFETELAKRMAEIRDRHKDELHATQSERDNLTRRVEDCLREVAQLRERNQELEAEMSKVSRIGKREEMDFADEARTWAGVSVSEKLPRNGDFIVAYRDPSGASVEPRMLVDNKDKAAVTESDIAKLVRDAKERSLSVAVLVARREEQLRQIDRECRWGKKDGVWILRTTRQWLPRDLEVLKPLLERMRTEGPDFLQRNAALAEEVRRTFADIDAIEKELGKASKAIQSVSGLVAKYKGRLERLCESPVQNKPSRSATVSSNDLQSAGA