Scaffold Ga0224558_1003502

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1003502
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13006
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (95.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006399	Metagenome / Metatranscriptome	374	Y
F017708	Metagenome	239	Y
F017965	Metagenome / Metatranscriptome	237	Y
F036885	Metagenome	169	Y
F046588	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100350210	F001596	AGGAG	MSWFHSSTAAAVVARNYASPAEIVGCFQDQRNVLSRLALLITGDQATADQAVVHACKITLQGNSPFRDWLLEWTKAATIASAISHGMEAIRICEATYTDRRCQHAEHLSQGDAEERAASLDLILETDAQTLIAELDPLCRAVLVLRVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHAGPVKSVEENHDASHAV
Ga0224558_100350212	F036885	GGAG	VLDIPCSDKRVGAKAMSKKKDRERVIAEITLSHLMRLENKEGCPVSREQALAFLNQEGQAFEMWKHMMQAAENFIACSLLRHSLSPRGHHGFAPQSSLLRSISTAAR
Ga0224558_100350214	F046588	GAG	MTYIPTQAGFMRLEDSETLLRVIFPNYPSLEPCHSAPRLEPIPQGSKDYRNEERMSLC
Ga0224558_100350215	F017708	AGGAG	MARVIEFYIPKNFRKPLRAEAQPQFGKIIEFCPQTKRSA
Ga0224558_10035022	F004823	AGGAG	MYVTKAVNGVPAIQRDGQSVLRVCDQDWEFANWLCALLNELGQQSEFLLNEQDWEWIRAIDSPFRRAAQHA
Ga0224558_10035024	F017708	AGGAG	MAKVIEFCIPKNFRKPLRAEAQPQLGKIIEFCPQTKRSA
Ga0224558_10035027	F017965	GAGG	MDSKPNSGIALTDMSEKIGHRDASYLFACHLEWITKRNLAAYQELLAALDDHDGDIRRLAESLLHRSTPRPKRTATGIESW
Ga0224558_10035028	F006399	GGA	MATPALNSRVQSLVTEYGVFWQFWPQFEQTDGERRLVGFEVELIGSHRSDLNHVDPACPICRHVRSVLLAIADLMPGELTFSRNYLTYNIDSHSNSIVWLPALGNRSAVWVSIYVFLNRANGQSFETDLLKEVKTFLNRWGIHQR