Scaffold Ga0224558_1003427

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1003427
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13232
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F004586	Metagenome / Metatranscriptome	432	Y
F010699	Metagenome / Metatranscriptome	300	Y
F049409	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100342716	F010699	GGAGG	MQRMASNHTWFKWLMQSKNMTSSLILATALALCSALIAAGGTKPLTADPLTGLPLSPATDSRLHLGNDPTRLPESNVCKSKMQADFYTVYDSKVDATLAWYGVHLPGFKKTHAYAANRSQDTFYNAEGTLSVSVTGSSGRAGENTETYSVVYSLFQPALMEKTIIGLNQQKIVCR
Ga0224558_10034272	F000065	AGGAG	MLSLPRLLVAIKRAYALSGKKQSNMTDITDHPMRKLRIAPQPPLSHRGAAPDSDRARKPRLAEPSATGQQLLFGDRVEALGDFGKPTGQFGTVERTNEDEAVVKWDNNGRIRMHQPWVKKVSGAPVTKLK
Ga0224558_10034273	F049409	N/A	MTTSLKSVIETLNRDANQLERCAQKLESISPDLSLDLASDTELINQKVSSIRKQVESLERWE
Ga0224558_10034274	F004586	AGGAG	MTTNEGNKCAHVPCQCLAQVGDKYCGQSCKEAESKEAEIACECNHGTCPLTA