Scaffold Ga0224558_1002653

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1002653
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16010
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045503	Metagenome / Metatranscriptome	152	N
F061699	Metagenome	131	N
F098523	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_10026531	F045503	N/A	VAPYNGDMKVKLPRPAPSNQRVREIQQWLGAYGGSVANAYVVNAGALRELGAERGILEKILWRVPRDKPEMPLTGEAMMELLAPKRLMREVRKQLKLDTQEHHAHTNAFEQSRQQLIASKIPANAQNREAVIREVESWFKMVLPEMRNTKAILRATELRLESRRDIHPVLPPLRATTELVEQLNKREPGRVYID
Ga0224558_100265318	F061699	GGAGG	MAVSARKPRVFETAHDAVRSIRGKWQEWRAAGVGFSKFHKPGTAFALPFDPDDYLWAGPVMLKLDIPEGGDVFCRKGHYRRGVRKYLGQLKRGERVPPVVLLYHEAWDWTMQDGNHRMEALITHRAPNYEAFLGKPKRRKPIDEF
Ga0224558_10026532	F098523	N/A	VDLDKLKDALQKAGIAFTERLVPHANPATTSLVVQRVGYALSVTPTIYYHGPVVEIRPSGGPRINFHSNKDPAELVAVMDTFVQVRKWAARLQPKWATRQMALITGRNPGSPVLVYEPCCARMAIIPRPASFNQLHKHSPVKKYKIGASPKLIATDLVQLHQENTPKRSWESFVEDWNCQYGASFGHELALSASYIYAWNGMRFLMDGDDLSMDVWGPVFSVAFPEAIRLLESIQAVLGKTVKGRGNEEGPPREADPV