Scaffold Ga0224558_1000701

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1000701
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38580
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (75.76%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000372	Metagenome / Metatranscriptome	1220	Y
F000985	Metagenome / Metatranscriptome	813	Y
F006391	Metagenome / Metatranscriptome	374	Y
F018974	Metagenome / Metatranscriptome	232	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100070118	F000985	AGG	MKNVYEVLRQKELELTRLEKEVEALRIAAPLLSEEKEQLAEAPKPSLTTTAPPPQPVRIPQAVAAQAGSQPARAAGWEEAAKRWP
Ga0224558_10007014	F000372	AGGAG	VTSSGSRFQSRVARRWTVIASGLLLLALALVVIYTGPNAFFSPVALVVVAAIGLAALLLQVWFRQDLPNIHSPRWLNVLGVLCAMVTLFADYLRLTRRALDLVAFAAVVCFGISGSLILHALRRRLRTPQPTETE
Ga0224558_10007018	F006391	GAG	VEKDISKFDWVTERSSCSLPNVFKALRLQAVEDVKTRNALRPNNSPYKFSVVENDSDFTVLLEAKDVRKSVIFSLAEHAILVRGDKGNPMFDVTLTFNDKGECKLNANEQELDFWQVRRMALEELLFRAF
Ga0224558_10007019	F018974	GAG	MKLKAFLTAVMSLLSILVLGLGGVRKNVFWLWIGFVCSLVSAVFVQLFINRVKKE