Scaffold Ga0224558

Basic Information
Taxon OID	3300023090 Open in IMG/M
Scaffold ID	Ga0224558_1000585 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023090 Open in IMG/M

Scaffold ID

Ga0224558_1000585 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	42453
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (83.33%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

42453

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (83.33%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0475

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001591	Metagenome / Metatranscriptome	667	Y
F041053	Metagenome / Metatranscriptome	160	Y
F064319	Metagenome / Metatranscriptome	128	N
F084476	Metagenome / Metatranscriptome	112	Y
F089726	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_10005851	F089726	GAG	MSAEQIDVLCNHCGQAFSTFLHEMADHNAKVTCPSCGKVHDDKPPKTAQPDVRAASIKKTSKPI
Ga0224558_100058524	F064319	GGAGG	MRNAVVVLLLALVAGIVQAQEVNIGPSQASIAGRMASKTKTTLEPLDVITTIRCERSLMLCREEVSMLWVTDEGSFEVKHDSRIWDVQVWSTDTGSIQASRDGNTLQFSKEENLIVHHHHKDGIDTVHEFTIVTMDKWIAQK
Ga0224558_100058527	F084476	N/A	MRKTVTILCLFFSLYAVGKDKEPATSQIPSGARIVIAPMNGFETYFAAAIREKKVPITLTLDRDSAQFFVVSTETEWRGFVAGSGASANWNQDGGHYESASAASSTRGLESSIMLIDARTKDVVWAYEVHKSSHGALLFGTHAARGQQSLAEACAKHLKEYIEKGK
Ga0224558_10005853	F001591	GGAG	MTRPFAEIVRVRNVSNHGAVLIGFRSKVQTGEVLDVQHGASRVQFRIVWMSPSGEAGIEALAFESPIFDIGFGIGLPKVFEMVGTG
Ga0224558_100058534	F041053	GAGG	MSSRELGPEWVLSEFLANAEAWDQDDIGELAIVARRLWPRVQAHARKELTNKTSDDTMVLATGVWESVLLSVAKTVRRSNGKGRPILNLEAYLFGAFHHRFNRALRQERRRREMVEYLPLGRDLERLRHAHDLKSVADLDRSIQVKQAIENMDDWTRTVWMARQSGYSWREIAEYLRLTEPQAKLRFRYALGRLRARFGSAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224558_1000585

Overview

Ecosystem & Geography

Associated Families

Sequences