Scaffold Ga0224558

Basic Information
Taxon OID	3300023090 Open in IMG/M
Scaffold ID	Ga0224558_1000345 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023090 Open in IMG/M

Scaffold ID

Ga0224558_1000345 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	54048
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	35 (59.32%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

54048

Total Scaffold Genes

59 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

35 (59.32%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0475	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0475

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009138	Metagenome / Metatranscriptome	322	N
F013515	Metagenome / Metatranscriptome	270	N
F035282	Metagenome / Metatranscriptome	172	N
F071179	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_100034514	F071179	N/A	MSTSERLLRAVQFNSITALRNQLGSEQFIEWLITPCHRDGMTPVEALESGLWQEVAELAEDAMSKGVAQF
Ga0224558_100034525	F035282	GGAG	MKIVVLLPFILLVRVIAHFDPHLFRYWAVHSMDYWRFWGTTWKGYAIGLAGWAILLGGLYSLVVWLL
Ga0224558_100034529	F013515	N/A	MCFPRSLLPSSIWRGRRREFAGKPKGMNKQTRKTKLLDDGFMTVPSYPFSARDIFGDLRSRLSVEHRRPMSFERLAKMLGQSKSTTYNWFDIFHHPHVLGFLCLLERLPPAERQSFIEAHCRAYPTLDDPRVAHAPGKTGKLLELLNQKAGLTIITGGTDFSRTFVFTALAHAAGRADGKLLATAGIDLHRSNLFVPVESLIYIDGDLAPDHVRRLTHRIWPRVLTSGATRLFFNRVWSCVPEVRDDLLRCAGFKHVVIAEEGALDVGDLKTKVPTPIHVLTLSTAQSVPEGILVNCRRVQRKTTGKLRFWKKCRPMD
Ga0224558_100034530	F009138	GAG	MTQNRIFERPDCRRRSLKASLTDVTKTARQWDAVFAMRVHPELLGKYTVPNVADDDEGYYLVGALVQAIDAALEGRIPSRLVSYGKFLAIDFAFLAQRRRTSSEEVLNLRAVLGPCDGSHPFVCVARQDPPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224558_1000345

Overview

Ecosystem & Geography

Associated Families

Sequences