NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224558_1000081

Scaffold Ga0224558_1000081


Overview

Basic Information
Taxon OID3300023090 Open in IMG/M
Scaffold IDGa0224558_1000081 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106495
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)78 (82.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013438Metagenome / Metatranscriptome271Y
F016551Metagenome / Metatranscriptome246Y
F027769Metagenome193Y
F039020Metagenome / Metatranscriptome164Y
F094233Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0224558_100008115F016551AGAAGGMSIEEVSAERFAQLFHHYHQALGNDSGNAAHLRTCDAWANVPPSEKNRMIAATRLALLEVEVIPSERESRRYFAKPGEAEWGC
Ga0224558_100008146F094233GAGMKRTLLLTVMLCSLAALLSAENRNHQQGTIVRMRMTDCIAPQHAFMSAMSGVQATMAESCPEYVLVTDSVVYVIIGKSSNQLIPLAESTPFHFQNNEVLIRVDDARKESRFHVKEMLLRPEWERNQRILDAADSAAMQRHVNGALLVDADARQ
Ga0224558_100008174F039020AGAAGGMTGISGCAAARATDSLLRSLGGTEVVMLFAAAGMPGDAVAELGLVDPGVEQAAIAPVVVRELTTESNGPRRRIELLAGRSAMAPQVSQRNVASADVLFETALGIVYQGDMFHIEGFVVERFGGVAYLYRVLAVA
Ga0224558_100008181F027769GGAGMGAATLIGLVVTLLQSILASAQVGGMSPEIIAEIEAAVAKLLAVQGTPVTYAQLEGLRVTTKW
Ga0224558_100008188F013438GAGGMHRLYQWLTQRASSFRSDTSDGGTSRTVRTEVTVERQGMTLLVGGVAAGFDNCPLCGQKLAPAQAEQARLRLQQDSTAQTDLPVDGTSP
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