Scaffold Ga0224558_1000003

Overview

Basic Information

• Taxon OID: 3300023090
• Scaffold ID: Ga0224558_1000003
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 313914
• Total Scaffold Genes: 326
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 269 (82.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0475
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F000795	Metagenome / Metatranscriptome	887	Y
F010268	Metagenome / Metatranscriptome	306	Y
F020407	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224558_1000003133	F000795	N/A	MSTQTVELEGFEIELASELYCDRGGDHRELVDRARTDRRRLGHNVDESAVLCVRCMKAIPLKV
Ga0224558_1000003206	F000208	GAGG	LRIRVTTRADLYEKRKQEHIERGYRIEDERPIAVNGLRSFIAVRELTASDPVDELVERALNRMAQ
Ga0224558_1000003236	F020407	AGGAGG	MVKQRFLTHFKPWLFAVTRVVGLIVGYQLFDKTRTYFQYAPLNSVDVVAAATVALLAIGLLCGLWAWGEWCWFKLRRLRRFCSKLKQAFNNRRRPRTVRTSRSVAGTMV
Ga0224558_1000003237	F010268	GGAG	MATMIASSPDAKTNQIGSRPVGMGGRRTRPAAEEEIVAGARFFLPKSGTNGHAPELGRELPNEGEARVEALKSGVTYYSVQEWRPVADFAGRNPELKREAVPRKGTTTLQAG