Scaffold Ga0224555

Basic Information
Taxon OID	3300023088 Open in IMG/M
Scaffold ID	Ga0224555_1035241 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023088 Open in IMG/M

Scaffold ID

Ga0224555_1035241 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2037
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

2037

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0474	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0474

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016632	Metagenome / Metatranscriptome	245	Y
F025427	Metagenome / Metatranscriptome	201	Y
F027079	Metagenome / Metatranscriptome	195	Y
F039911	Metagenome / Metatranscriptome	162	Y
F047437	Metagenome / Metatranscriptome	149	Y
F076760	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_10352411	F076760	AGGAG	MSLAVKYKLFWAGCIAALCGLAFWKNSKSYPGKSKLWRLGKSAIDTGLVLLMVLYAPALLLMYVVIWLTSPFKNKIMQSTAAFA
Ga0224555_10352413	F039911	AGGAG	MKYTIAVVLAVVAAVAGYFGIRCLTHKDLGFTPVKRYAAKLAKTLLHTEATAAQEAGAAPAA
Ga0224555_10352415	F025427	AGGAG	MRPGEMEELLASLGTCPIQKKGLSWRLFKLYWKKLLFIALMLVLPGGLIVLFLCITAWALNWEREMTAYMDETYKK
Ga0224555_10352416	F027079	AGGAGG	VIKAFLNLCLVLFLDTLAYMVAIVAAAAVAWAAVRGAKWIFAAFRNSVMALRARQRKKEMCAHATR
Ga0224555_10352417	F016632	GGAGG	LTGILELFALVETGSAIGFLANWRNKVLKTKVNFFRQPNNRPSPFDKILRGKVGRAVTRQDRLRLQLADGLVNLIRKLVQYDAFRQVVRGLALAHSPMRQAFRKKGGRPW
Ga0224555_10352418	F047437	N/A	LYNEGAKKAQEYSHESGDPIDTLKAKLPALCAIERLARPDPVVPQNRLGLTLGIIIAAVLGSIGMGALIGLATGMAHWIVRLFG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224555_1035241

Overview

Ecosystem & Geography

Associated Families

Sequences