Scaffold Ga0224555_1014199

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1014199
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4430
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003764	Metagenome	469	Y
F003942	Metagenome	460	N
F004301	Metagenome / Metatranscriptome	444	Y
F017951	Metagenome / Metatranscriptome	237	N
F022571	Metagenome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_10141993	F017951	GAG	MTIAHKFETAGLGIAPFRLVRVEMRWFSIPGIPGSKKPGSSCMFCGHPIAECCFLRDANGKEFHVGNECIKKAGDAGLYDTVKKELRRMKNQAEADAAAATFREGRDILARADVRASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ
Ga0224555_10141994	F004301	GGAG	MTAMQFSLFDARPAAATVGMEPSVNARNAKRQLDTMRKQLAMAQADLEDVDYNLSIIAMHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVLRWIRHLIFTLNAERRDVLSAIAELEPKVAALSQIIGNAIQ
Ga0224555_10141995	F003764	GAG	MQIQLDSPYANDENPAALLAGAEIEAAGLHRCLKIVRLWSQSNALPRPRREEIIEEEQRLANLYAAILFEIGSAFGLRAADELKVRIEAACILDDWECPPAEQGLLFPIPNDSPTAASPAWARK
Ga0224555_10141997	F003942	GGAG	MLGHRLNPTIHRYEDVELIEVHSEYLECSFMVARDEWETGKKLLNIFSPIDGNVLGFPHYRLHRDNISATGPKLPDGTTAQPGMAEAIEMQRQAGHAIYADHLSAMLYGNGLNPARY
Ga0224555_10141998	F022571	AGAAGG	MQITVWSVAADDDNCTYASVHETESAAYRRLIQLTVDADNKDDVAKAEAFMEAEDFDSLDEWIHEEVIEPLNTYSVDQHKIDVPTIPSSADDGKHITRRELASVLHGLRLMQ