Scaffold Ga0224555_1009171

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1009171
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6584
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031336	Metagenome	182	N
F039920	Metagenome	162	N
F056263	Metagenome	137	N
F062380	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_10091711	F056263	AGGAG	MAAVITAEVSTPWLQQAGLKIRSWHGTGMNTFNAWRQHRDQEALEKALARIIETANGHQAKGLPKGSPAYFALRDKATAKIDTFCKKWNVDRTVIEAEAPALREMYALTIPDKQAPASLKLLAAFLGGILSLVLIGAASGLVNVGHNWVMHLFTHVIH
Ga0224555_10091715	F062380	GAGG	MPSDFNDFECNDFEKLLFADPGSTGTCKLIVAYHPGFPLALGRIECASGLPIDVRVNVLESTPVLHTAELVFTGKTTDLCELQMRLTQWATQFPHLPPMPEEALYARDNPSAPSGPPEGVDQSGV
Ga0224555_10091717	F039920	GGAG	MIDVQALDRTGRRQVIHGLLAQYNLGSESAKVALGMAHQNLPGFTALMERNVRLMRPGAAMEKTLQAVLARPAKSKFRRAAPEVNHNSVRCIGLDKLKF
Ga0224555_10091719	F031336	AGGAG	VLNGDVIILNPPKDPSRFSDASQSVSLFFWEHSDLIPLLTAEVALAVLIFAGFFWWERRKSKQAVQVG