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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023088 Open in IMG/M |
| Scaffold ID | Ga0224555_1006801 Open in IMG/M |
| Source Dataset Name | Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8692 |
| Total Scaffold Genes | 18 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (88.89%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Sweden: Norrbotten County, Stordalen Mire | |||||||
| Coordinates | Lat. (o) | 68.3532 | Long. (o) | 19.0474 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050107 | Metagenome | 145 | N |
| F053027 | Metagenome | 141 | N |
| F055379 | Metagenome | 138 | N |
| F057847 | Metagenome | 135 | N |
| F066389 | Metagenome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0224555_100680117 | F055379 | GGA | MGTWQTLLDVCPYIPIPLMAILFALGLWHEIVCSNRRIAADIKPPPIQDSTLYKIEPLQRYKTTVADNAIGYLT |
| Ga0224555_10068012 | F053027 | AGGA | MLLTERQIDLRLKCPMFDMEDRHGPSSYECAQKLLRWAVLDAFKGRLVPVATLRGKFESIWNGHTAGWAPDHQQAYYAGLRAGNTAARKTYLFLQHYEVLKPVEAYSVECAGDCIEGEYAVVLRRHDRRTDERPMILQAHEWRPAYCQQPGAIELIRYVHLMASTDYTVPGVYHLPLFRGEPWKMKNFDLPLVRKAVTSILDAVRNTDHPVPGSHCEDCIGKRCRSLAHA |
| Ga0224555_10068013 | F057847 | AGGAG | MPETLPVFMKGERKPVNCFRDAEGFLVIDAVIGDDDLTVVSPDSGEERFRITDGEVTDLRPHEHEWAIDHSHCTVCNKSKQQINEEQDEQTHPTAVQ |
| Ga0224555_10068017 | F066389 | AGG | MPPTEDLIPSVGMEIADTDVPYGSSYTNGHLYGAQAMGNILSGDLLNPDSAPLAEAFDLRTGTTYHGFRFPGNVVQDSRIPVGTIAMLNSNCHMVLMAPDGRTVECDVRDVMLNVDPARAMSERIALKAGEFGSGTIRGTIQMSPESHKGLMRAFGFTDEPKPVIVPQEDLFEDRTW |
| Ga0224555_10068019 | F050107 | GAGG | MAGLWFKPVCDDLLGKIHRWWVNYERGEIFSTREWLDREGNKVDKPTRYAYRIPFRPLEIQHLVSILEALAPTNSLTKDMKELHESMKHRFINLNLKNRPRLMPTGEWMVTLAWYKADIEEVLTLLLEAKSGKSQTIESLAERQKEQGKELFEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |