Scaffold Ga0224555

Basic Information
Taxon OID	3300023088 Open in IMG/M
Scaffold ID	Ga0224555_1004904 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023088 Open in IMG/M

Scaffold ID

Ga0224555_1004904 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11813
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	9 (100.00%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

11813

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

9 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0474	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0474

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001596	Metagenome / Metatranscriptome	666	Y
F003165	Metagenome / Metatranscriptome	504	Y
F004823	Metagenome / Metatranscriptome	422	Y
F006278	Metagenome / Metatranscriptome	377	Y
F006399	Metagenome / Metatranscriptome	374	Y
F010114	Metagenome / Metatranscriptome	308	Y
F033181	Metagenome	178	Y
F046588	Metagenome / Metatranscriptome	151	Y
F105941	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100490411	F010114	GAGG	MIIELNDDETRLLYNVLLEQAQEHYSYASTSEVAERLCKLATRFGRPVRELPNITIA
Ga0224555_100490412	F001596	AGGAGG	MSWFHTSTAAVDARNYASAAEIVACFQGQRNVLGKLAFLITGDQTTADQAIDQACEMTLHGNSPFRDWLFEWAKTATIASAISHGTEAIHICETAYKDRRCPHVEHLSQGCAEERAAGLDLILGTDAQTLIAELDPLCRAVLVLSVAIRSSIQDCALRLNVSRAAVLGANCHAMTWLHDGHVKAAEENHDASHAV
Ga0224555_100490413	F006278	GAGG	VFRAEIQSLASGPTLKLEGKLVADWAEQARCLVTKDVLPKGLIVDLTEVSYIDSVGEQLLKWLASVGALFVAGNVYAIAVCDRLCLLPMQRIAVRRKRRHGNNEERSSIRHSHSVEAI
Ga0224555_100490415	F006399	AGG	MATPALNSQVQSLVTEFGVFWQFWPQFEQTHGERRLVGFEVELIGSHTSDLNHLDPACPACRYVRSVLLAIALAMPRDTSFRRNYLTYNIDSHSNSILCLPALGNRSAVSVSIYVVWNQSNGQSFETDLLREIKAFLNGCGIHQR
Ga0224555_100490420	F004823	AGGAG	MYAAKTVNGIPTIQRNGQSVLGVCDRDWEFANWLCALLNELGHKSELLLNEQDCAGLNANDRAFRRTVQHA
Ga0224555_10049045	F105941	GGAGG	MWKITTRGFTLQEVLIMAATNVAAALIATDKGERTTGTAPRTEIQQAPGDCHGKSD
Ga0224555_10049046	F003165	AGGAG	MAKVIEFYIPKNFRKPLRTAAQPQLGKIIEFCSQTKRSA
Ga0224555_10049047	F046588	AGGAGG	MTFTFTPTGFMRLEDSEKLLRLVFPNYPSLEPCHSAPRLEPIPQGSKEYWNEERMSLC
Ga0224555_10049049	F033181	GGAG	MSFEAAWGFDPDRAIQAQGLSLSEIETDKFTYSAEEQRAARIPSDVHAQVYELRRMYRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224555_1004904

Overview

Ecosystem & Geography

Associated Families

Sequences