Scaffold Ga0224555_1002101

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1002101
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24529
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013913	Metagenome	267	Y
F014639	Metagenome	261	Y
F020887	Metagenome	221	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100210113	F020887	AGGAG	MRTKITLYGEIAGNIWMPAIECTKEFQLELVRIPRTSRIRTYPGIAPRSMEITCLRDALLHLINDGDFQSCSINWARLEVSHTFGDESRGTRTVKVRTRMWKVRGQGENADCFA
Ga0224555_100210114	F013913	AGGAG	MNLTPSMKGSFIAGIGLWLLLWAALFKADEIAELGGIKRWINSERCFRWIREHKSTSLIGTEVCNYAHTGLDPLGVTFALGGTLTNFIVIYILLPMLNRAKRGSKTLDLKF
Ga0224555_100210116	F014639	AGGAG	MSEITQFTNTPAAPMETGLLNSKWKRILFFFHKRVFLSRLEGILNAAAGHEGNSLPSGNYQYQVLSARAESLCAEFAERWGLDVDLLRARIPGLTKLAGLSVPPLTKSYAKLACIGMIAIPLALFLLGIMAGLISVGFHLVGGR