Scaffold Ga0224555

Basic Information
Taxon OID	3300023088 Open in IMG/M
Scaffold ID	Ga0224555_1001606 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023088 Open in IMG/M

Scaffold ID

Ga0224555_1001606 Open in IMG/M

Source Dataset Name

Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30349
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

30349

Total Scaffold Genes

33 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Ecosystem

Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Norrbotten County, Stordalen Mire
Coordinates	Lat. (^o)	68.3532	Long. (^o)	19.0474	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Sweden: Norrbotten County, Stordalen Mire

Coordinates

Lat. (^o)

68.3532

Long. (^o)

19.0474

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008672	Metagenome	329	Y
F010661	Metagenome	300	Y
F011724	Metagenome	287	Y
F083583	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100160611	F083583	AGGAG	MSDITAIDQSYHLNANIEIGKFTCLAPDTSVSADGCNVPSGANGQFLGVAQESILPDAMADYSGGQYTLVSGTAWPAGAIPASGLGRNIRTRMVGISRVVASGQITRGAYVNIANAQGQIKTVSESGTMINVVGIAVDAAVNADDVIRVLVMPFTYKG
Ga0224555_10016065	F010661	GAGG	MVKSNGIATASEFRKLAEDGAFEEPRRVVLPKSGYVVLLRRPTNFYWALRRSVWPPELREKLDLVALGVRPDLTAEETLLLVREDQQMRNEAFVDPKPSLNPGSMQFDPNWLPKEDAEFILKYLRGQVLANGQDLETFPRGEPGHPEGSGADGALVREDPQRDVIPRGGALAS
Ga0224555_10016067	F008672	N/A	MWQSYYNAGLSKQIVRQLLAIVSRDIQAALDFVSGVPGSYAPFAEYDLALLPVEQYPAILLTPDKVTFDEEAGSTLHQTMRLTCVIAVTHQDRNTLAEMTQDYVRAVRAVLDTLWESTPGDSLLTNLPLPSPPFPDGALSPGLASGKLMKIFLDGHTFEEIRRSPQSGFAMAATMSIIVEIEEN
Ga0224555_10016068	F011724	N/A	MSYCTVDDVCTAFPRFVRNVAGSIQDTQIQGWIDDRKARIRGAFLERLLDPDAMTLTPDQANILRALNRDGAIADLGDALQGNVSLQPGEYSLAGEHRKTFEKQIDEINKGLYDALFANTIARHVEIEPLLGGVAGGETDRSTAFDRGENKAFSKNEVF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0224555_1001606

Overview

Ecosystem & Geography

Associated Families

Sequences