Scaffold Ga0224555_1001404

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1001404
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33396
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (51.72%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003261	Metagenome / Metatranscriptome	497	Y
F065348	Metagenome	127	N
F079501	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100140427	F079501	AGTAG	MKPRYTNQSTERILRLAKSFPCLARKLGGWHPAEFDPEQFLALTDGWSHGELLCAMFIVSVWDPGSAKLRGWKFDLFEFVGTADPDHRVALMLWLACPSWY
Ga0224555_100140428	F065348	GGAGG	MRNDFKHLIRKVAQDLRVLYLLPFVLLVWISEFLDRRLWRYWNMKSMENWRRFQWRSPAYIIALVGWLFAAAALLCLMHWRLW
Ga0224555_10014046	F003261	N/A	VQPSRLQNLDDLLAQAEHYANHSMRNIGHLPPTLFLIGSKGPVMFMPESLADESDKNDFATIARLMCIAHAATACVMALEAWIKSAKPGEKFDETEPPSEAFDRQEVVVLLGESQHGQKQKFLPIIRSDNGNFFGFGESDVPSMDKMSGRFAQLLPNKVPDEGIREVAKAMLKVKGVGRVTQVPGGEVQRSRRHRL