Scaffold Ga0224555_1000753

Overview

Basic Information

• Taxon OID: 3300023088
• Scaffold ID: Ga0224555_1000753
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 30-34
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 49285
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (80.85%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042130	Metagenome / Metatranscriptome	158	Y
F102351	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224555_100075333	F042130	AGGA	MWARGCGGEATLMREVDLSGARFVAPWRDDLIVKALSVQGGEADIGGEKTAFARIVMSGVDLRHVKVEDQAPRRQEIAVLKLDDAAALAAGLHDVVDRIVRSTPTPAIPASGSWSWTSVPPLDQDLLVARASANGAAVPAVAGMASTVRVDFTGTRVRGLTAANPAVHVQGAIFSGPRQAQALVSSLRKVVRSALEQRRVEFYVSAEESLSAIRI
Ga0224555_10007534	F102351	GAG	VTRAESRDENAEWYPYFLIEPDPRCPECVTIMDWRSAHREIVITNGTEIKLTDYGWGGRHLHLRDERVAHHEIRVARERKERESKQHLHPVA