Scaffold Ga0224554_1000053

Overview

Basic Information

• Taxon OID: 3300023068
• Scaffold ID: Ga0224554_1000053
• Source Dataset Name: Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 101700
• Total Scaffold Genes: 94
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 80 (85.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location

• Location Name: Sweden: Norrbotten County, Stordalen Mire
• Coordinates
  • Lat. (^o): 68.3532
  • Long. (^o): 19.0474
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065339	Metagenome / Metatranscriptome	127	N
F074279	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0224554_100005388	F065339	GAGG	MDPIRVWFSLISGEAATPVNLVVEEWPQSGPAFLHPDILAVAAPDFKETIDLAYRQTLFTLGWPDSATFRIGIESIDPLAFPLPYGFEGDSHFGAVAVGLAQAVARTYPDHFRSGAKHLLPVLQAVSLERVAVAAALDSKKGDFKPVGCIRTKLESFCMLEVSRPSVCVISPTQNLTADSGPLLAVPLQNDPDPYVSVNGHQALPLLRARDPIDVFVQLWEAQARTFAGCL
Ga0224554_100005390	F074279	GGAG	MKRIRCVSLLTTSEVQPSRIAEILLRRECTAALVALLGDGDEKAQERWGKQLPKILNAADKILRDAIDRSLPVTGLRPVEIRESVAWTADSNALAGHVLEVVSRQCIERVYAEAVERIASRRTLPLAELSLALVPFTDSYTPEKLLARECWCGCWVEDGVSKCSFCGGPAPGGRPTRVWRRVAYGSVQLDVLNETRHNLEERMEKLREMGAQVPSGADPEDYLRQLEWDAPEGEETHERD