Scaffold Ga0222700_1075929

Overview

Basic Information

• Taxon OID: 3300023061
• Scaffold ID: Ga0222700_1075929
• Source Dataset Name: Saline water microbial communities from Ace Lake, Antarctica - #1454
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 535
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Ace Lake
• Coordinates
  • Lat. (^o): -68.4725
  • Long. (^o): 78.188
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004580	Metagenome / Metatranscriptome	432	Y
F044420	Metagenome	154	Y
F095327	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0222700_10759291	F044420	N/A	VSTGNLSLNTNWGATVLKLVPGFFALGILGIGIAVTYGSLRDAGVV
Ga0222700_10759292	F004580	AGGAG	MISRLIGGFVSILIGVSLIGPIAQEVNTAAVSTGNLSLNTSWGATVLNLVPGFFALGILGIGIAVTYGSLRDAGVV
Ga0222700_10759293	F095327	AGGAG	MISRLIGGFVSILIGVSLIGPVANEVAGVAVTSGHLANSSSWGATVLKLVPG