NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224519_1040752

Scaffold Ga0224519_1040752


Overview

Basic Information
Taxon OID3300023060 Open in IMG/M
Scaffold IDGa0224519_1040752 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - IR.B.S.T0
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)567
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3529Long. (o)19.0475Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026465Metagenome197N
F059572Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0224519_10407521F059572GGAGMTAMQFSLFDARSVAPTVGMEPSVNARNAKPQLDTLRKQLATAQADLEDVDYNLSIVAVHQRASREGKIDANWWDAAMRFGMLDPGEEPVYRLGSYPVKVMRWLRHLI
Ga0224519_10407522F026465N/ARRMKNQAEADAAAATFREGRDILVRANVQASLSTQPHPNSFFAAKGKTMADYYEFLLHNSPRGTVANTVGKLREFAAESIQ

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