NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193714_1057822

Scaffold Ga0193714_1057822


Overview

Basic Information
Taxon OID3300023058 Open in IMG/M
Scaffold IDGa0193714_1057822 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)550
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9355Long. (o)-106.9424Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014924Metagenome259Y
F085833Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0193714_10578221F014924AGGAGGMQSAATRGFTVVTVVTLIFAPVWKGNHWVNLLTGKKTETTVVKCQPNDPCPAQKHITQQVALPHP
Ga0193714_10578222F085833N/AVASYPLLAFAIFLVAFEFQNLLSWGGRRTIKPGVEKSQDFTIVVPVFGHPRYFEGERLLRYRHRVLVAMEI

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