NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0222648_1091640

Scaffold Ga0222648_1091640


Overview

Basic Information
Taxon OID3300023054 Open in IMG/M
Scaffold IDGa0222648_1091640 Open in IMG/M
Source Dataset NameSaline water microbial communities from Ace Lake, Antarctica - #335
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)561
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Ace Lake
CoordinatesLat. (o)-68.4725Long. (o)78.188Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020853Metagenome221Y
F034073Metagenome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0222648_10916401F020853AGGAGMIFLYKIIILCYSMLSNHDIDELVTKMGISNFKGCFYKDKITKIQPNSSYIINLNSELDEHGNRNNGSHWCCLVTDDMKQCIYFD
Ga0222648_10916402F034073N/AKGLGQVYDTGTNMIGKTKHLSGIADALKKGKAKNVSKLVGMSGLGLKLQGEGMKDARYRRPITMGNGMRMSGGACQSCNGSGMNDKFIFENVSL

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.