Scaffold Ga0136601_1001359

Overview

Basic Information

• Taxon OID: 3300023049
• Scaffold ID: Ga0136601_1001359
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7969
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043167	Metagenome	156	Y
F046756	Metagenome	150	Y
F070731	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136601_100135910	F043167	N/A	LVDLEHFPEVNGIINIEKNTVNLLVYTFINKVDTFMIEDFIDYEIVRNRDTVMLDRLETFISDNDLMMPDLKEIKKHYKIIE
Ga0136601_10013593	F046756	N/A	MIEDFIDYEIIRNRDTVMLDRLQTFIEGFDLEMPNLDNIKEYYKTIE
Ga0136601_10013594	F070731	N/A	VENANTFLIENANAFLIEDFVDYEIVRNGDTVMLDRLQTFIRDNNLRMPELEPIKNHYKIIE