Scaffold Ga0136601_1000043

Overview

Basic Information

• Taxon OID: 3300023049
• Scaffold ID: Ga0136601_1000043
• Source Dataset Name: Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #699
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61484
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (15.48%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Rauer Islands
• Coordinates
  • Lat. (^o): -68.5558
  • Long. (^o): 78.1913

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002045	Metagenome / Metatranscriptome	599	Y
F026883	Metagenome / Metatranscriptome	196	Y
F087244	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0136601_100004326	F002045	N/A	MDFFCVYCKTRKKFDKFVKVNKIKNKYIVDIKKIVDDEDVDFKKDKTYLKILIFNKIQQAIDKNKDIYYIPDFEKEFSVEKLLNLKKILGDNNFNVLIFYNEFRKNPKIIDNVLSNLSKFSNSQIVRDY
Ga0136601_100004380	F087244	N/A	MPLPHFTQISNVGSPGGPGTLPDEVVYLNLFEVTFILPVILQAQGRDPILLLENATKIDLNAANLTAFDIQSVTQRYKYSTREFLTTPTKTSGEVNIPFQVNVNQEGAMETWNTMKAWYDLVFNSQNGSLHYKSDLIGTIIVNQHDKKGVVLRRVTFQNVQMKKLDGYDLDWSSNDIIKEVTANFAWDYFIDEYIDQNFTINPPLVSGY
Ga0136601_100004382	F026883	N/A	MPLKHILKNKLMLQKHFHLQEYSIDSWPFWMFEENIKIVNEIVEEEEKNQGKQEQQQSSNFDANSMMKNAQSMTNNIPKPKY