Scaffold Ga0233346_1003291

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233346_1003291

Scaffold Ga0233346_1003291

Overview

Basic Information
Taxon OID	3300023043 Open in IMG/M
Scaffold ID	Ga0233346_1003291 Open in IMG/M
Source Dataset Name	Leaf litter microbial communities from Shasta-Trinity National Forest, California, United States - GEON-DECOMP-289
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1176
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Leaf Litter → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	40.2198	Long. (^o)	-122.9842	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015054	Metagenome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233346_10032911	F015054	GGAGG	MKVEDYFDGATNFISWKSRVLILEEIDFLKLVNEKVPKPNAEEDKSHWRKSDARARRILVDSIRDDLVPQISQKKTTREMFKTLKE

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