Scaffold Ga0233354_100122

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0233354_100122

Scaffold Ga0233354_100122

Overview

Basic Information
Taxon OID	3300023021 Open in IMG/M
Scaffold ID	Ga0233354_100122 Open in IMG/M
Source Dataset Name	Soil microbial communities from Shasta-Trinity National Forest, California, United States - GEON-Q76
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5370
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil And Plant Litter Microbial Communities From Temperate Forests In California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	40.2197	Long. (^o)	-122.985	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020517	Metagenome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233354_1001226	F020517	AGG	LKARKLIGRDIRHYLVKRPNHILTSSLSWNQVQAELKERGTEADEAMLFRGIVTLDGTEYRDKYADSRTHITEHVNEELG

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