NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255781_10142393

Scaffold Ga0255781_10142393


Overview

Basic Information
Taxon OID3300022934 Open in IMG/M
Scaffold IDGa0255781_10142393 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1247
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Maribacter → unclassified Maribacter → Maribacter sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001656Metagenome / Metatranscriptome656Y
F072869Metagenome / Metatranscriptome121N

Sequences

Protein IDFamilyRBSSequence
Ga0255781_101423931F072869N/AMPTFLEEGIKIILSADSKLRDKTPILWALPEKLPEGWGELKRMRYLDHDMSAGRNIKRWLKRDYETDSLILQQPPFEKHNDQSEIFTTVREPYERWWSGIRDFMYLLPWYSWWENEQIMQQWPHFHRGTFRIHDIMQQIKPQHLIKVDDGLNDRIVNFARKHRLLCFGNIPYERHIRHRREDIRKLEKVGQQQLEQWLRRNPDWQKKLDDYLEPDLQYWDKVKGQD
Ga0255781_101423932F001656N/ANGKGLTFVEVIFDDAITASATSLESLNSAFDKTAKVVNKNGTLLAASYRTAAKATDNDAAEAAAIDADDSIDSYQFVVEGTPGQFNAADSAGDINMDVDTTVIADAEADLETDILASLSIGDSAGNVHVKIRTLLPEGVGSSGDDAIYGMFDQRGDA

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