Scaffold Ga0255781_10035178

Overview

Basic Information

• Taxon OID: 3300022934
• Scaffold ID: Ga0255781_10035178
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3079
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001873	Metagenome	623	Y
F002942	Metagenome	518	Y
F004131	Metagenome	451	Y
F052561	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255781_100351782	F004131	GAGG	MRAKRTTVVADVSQFPFSVMRRQLITPLVREAAELLWPAEQRRVTVLLRAPEFWDECENADLEASEELADICFDLWVEAMT
Ga0255781_100351783	F002942	GGAGG	MTEEQFTAFSILLAAVSVPSVSLLYVLAWELWRYATEKEAINE
Ga0255781_100351786	F001873	GGAG	MKWWNIAAALAVLAGGADAEILMMSHDFTEFQHPFWATEADGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGYRYGIKRIPGAPVDDISDFVTNDWIQHHQNGAVEFGGNDSRGMVEFYAEQDISLQPGFLTVTLSNDREFAVWRFNGRVVYTHESGENNLQTFRIDIPDGLDQMRFEFSGSGTADGVIEHIEYYPDSTTVPEPSLGDLIDLIGNGVGGLIGW
Ga0255781_100351787	F052561	GGAG	MKKLSDVWLIGTQLAKHLQVSKTGLYRAAESGELRTSSTGCGRLATTLQEAERWLRQSRA