Scaffold Ga0255781_10011326

Overview

Basic Information

• Taxon OID: 3300022934
• Scaffold ID: Ga0255781_10011326
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6069
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005847	Metagenome	388	Y
F043911	Metagenome	155	N
F066599	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255781_1001132612	F066599	N/A	MDNDTCKDAMVRWCKYLEAKGWHESAPSENEMQLQAAWEMAARMGPDGFPAAVQYSIANGWKNLRVPNEGAAGAKKRKPHNQKAWQMVVAICLQHAATTPEDSKLRQDKLGDNFEAFRQVGGFGRYKAANDMQRQAMAAEFIAVLEARDGQQVAK
Ga0255781_100113264	F005847	GAG	MARTEPRGRIPQLYRDMRIGQRVVVNIERQRAFHLLRSAWVRHYRQQMIADGYAVPWLYLEPKGKNRTLVVRMRDEAEVKAARAAYLAKGKK
Ga0255781_100113266	F043911	GGAGG	VSLLRDCRRTTTAGGIVLSGELYVVYRLDTYGRRQYVFRQLSPVDCRAPIHRKGIAAQGWVNSLPKAKTYTDKAAADAAAKAIADATRHGRDAMRVISLEQAQRERAAALKQRGR