Scaffold Ga0255781_10003719

Overview

Basic Information

• Taxon OID: 3300022934
• Scaffold ID: Ga0255781_10003719
• Source Dataset Name: Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11825
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.972
  • Long. (^o): -81.028
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022856	Metagenome	212	Y
F035770	Metagenome	171	Y
F103275	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255781_1000371910	F035770	N/A	MAEYAYASHLRDNGHTGEIIYPNKDTSKQQTDGSWLLLTITGERLGTVSPNGTVRLT
Ga0255781_1000371916	F022856	N/A	MIVGNFRDILGKQRDKLYPQMPNTRVGDAHISIHIHMYKRANPLRGFDSLGGSARTLGER
Ga0255781_1000371920	F103275	N/A	CKMYFEIDGAGIRLNHTFTVGHDNPKYVDSGVKSMLLMAQAMGLKEPPKDTSTAFMGKSVSAELVKDENGYLKINEDWGRTWQATNVKPEPVNDNIQTGPSQADLDSVESTDASDDDVPF