Basic Information | |
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Taxon OID | 3300022933 Open in IMG/M |
Scaffold ID | Ga0233427_10006789 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 8726 |
Total Scaffold Genes | 20 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (60.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 48.5847 | Long. (o) | -123.5008 | Alt. (m) | Depth (m) | 100 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002078 | Metagenome / Metatranscriptome | 596 | Y |
F010167 | Metagenome | 307 | Y |
F013820 | Metagenome / Metatranscriptome | 268 | Y |
F015741 | Metagenome / Metatranscriptome | 252 | Y |
F022754 | Metagenome / Metatranscriptome | 213 | Y |
F029783 | Metagenome | 187 | N |
Protein ID | Family | RBS | Sequence |
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Ga0233427_1000678910 | F015741 | N/A | MGCSGLPLVELIPPVFNFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLESNPPEIVSKDLAQVSRNNDLYKEVCKKDKGVVDKLKGKTERLLKKDE |
Ga0233427_1000678913 | F029783 | AGGAGG | MIGELSGDTADFLNEIPWFDGIIYILMLMGLYVFYKWVNSKFQ |
Ga0233427_1000678920 | F010167 | GGAG | MIFAHTSLIQEGESALFYRFSRPLNGYMIAGVFVNDNVEAKMSFAKVWTYFVSEIVQADDIYASIPLGVANSMFDNYCEYHDTIEGLKIYKVDNFLKKQYSNYDKHIERAGSDT |
Ga0233427_100067897 | F013820 | AGGAG | MTVMISTIIGFIDKAIPGYKTYALMLIGALMMGCQMMGFHSFSQEAWGLLGIGGAATWKMGTDRDPVVKKK |
Ga0233427_100067898 | F022754 | N/A | MNELIITIMLVIPSPSKIVNWSVNKVPTQIQIIHESGLEVSYNAAPVACSFRPRHAKEMVFRSPNNRCYSVYDLSSPRFVRHPDHWYKIELPQ |
Ga0233427_100067899 | F002078 | AGGAG | MDIAAMFEGQGWFAIVGQIVLVFTAITGSLPDKFVQKIPVLGTIWPIFNWLAGNVFNNINHPKGMAAQNDVEKEIDEAKAKIRDRSGMPDVLDGM |
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