Scaffold Ga0233433_10033569

Overview

Basic Information

• Taxon OID: 3300022931
• Scaffold ID: Ga0233433_10033569
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007550	Metagenome / Metatranscriptome	349	Y
F011494	Metagenome / Metatranscriptome	290	Y
F091857	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_100335691	F091857	AGTAG	MKKIISLVGAICLSGCVVTEKKVVYKKISFADKKGVTTLYYPPTWQKFLKPIDDGTPKTMLVRFGETLNAQIE
Ga0233433_100335694	F007550	GAGG	MKKIISLLLLVGAVSTNAASLELKVMQQKTLPNGNAYGLESGIYFELTDLEPFIMYKLQYSEDLDKWTDLVHLGTYKMAMTSPYWTWKELPPYQCFFRVVVAW
Ga0233433_100335696	F011494	N/A	MRKYSVVDEEGVVRSFTQNVGDADHSALNDAIDVAQCAGEDVVEHLEDGTRVVVWSIDDAADEPWDGFNSDAEADGDALASAGWGTDEDYGG