Scaffold Ga0233433_10014949

Overview

Basic Information

• Taxon OID: 3300022931
• Scaffold ID: Ga0233433_10014949
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4859
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006306	Metagenome / Metatranscriptome	376	Y
F011798	Metagenome	287	Y
F040114	Metagenome / Metatranscriptome	162	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_100149491	F011798	N/A	VIYYTGNLSEDRCSAGAHFPKDVTAIPNAFAVEAKKGRVDFFQKRKTVMEKSATPARPIFDYIARKI
Ga0233433_1001494913	F006306	AGGA	MTDQTERLMTKKNETLGTNWSLHYRNLYEPRIKRLTKRYRELYDENQIMKKRLEKYEGSKRMVLYFNKKEKFNK
Ga0233433_100149497	F040114	AGGA	MSKERYKNEWINEEVNLWSNKKMQNFDQKKKRKLLTDNIIKMEAVNKFIKVSLFPVIDRAYKNGRNNFLTPAEKLDYLRRLCEGRKLRNDDVIKATREELVKTHVSGVSYE