Scaffold Ga0233433_10014823

Overview

Basic Information

• Taxon OID: 3300022931
• Scaffold ID: Ga0233433_10014823
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 4879
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007003	Metagenome / Metatranscriptome	360	Y
F040325	Metagenome / Metatranscriptome	162	Y
F056888	Metagenome / Metatranscriptome	137	N
F074009	Metagenome	120	N
F092887	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_1001482310	F092887	AGGAGG	VVISKPVRKNKKTTKSSVLIEPPRRVSTHDRIINVLKKHKNGLPLIEIQYEGNINSMGNLHHTIVFMVRAGEIYKEKCSHCNSTELYKLNI
Ga0233433_100148233	F040325	N/A	MARRKIGNSHTTICVSWEDKELFRKFAKFVKKTRTGDLYESDAVLFSKILVHYKENNTMGDKPNTTYPSKP
Ga0233433_100148234	F007003	N/A	MLLFIYLVMIHYFTKNIDQKKYNDIIQRIIMINGNDGTNNSGYKAWQNFEENWTLNIIPVTDQEDFKVYYKHLNVETSDGIAWGVTGVKVIYMFVNDVKNPFIIRQNVMPLGHELLHAIYQDAVGTSHITRRHDAPEGRANTRGAAATVIVHDNWYGTKKTIKIWIRWSMIWLPITIPFIPVKEAKKWYAI
Ga0233433_100148235	F074009	N/A	MGTKIKGKYAGQCKICGSDWNVGDDIFYQKEPKAICADKECFEEQGGKFTPYKSQGTLTSGTGGWGKTPIITKLPDVEISDEVKKITEYWDQFFVVAHHKTKAVYPQEDVNGDRFGQIRSKMMDQFMGLTNLIKE
Ga0233433_100148236	F056888	N/A	MNVSEVLDIKGSHENSQKLVAGDKITIQGFKIKNVDEVGAEVAEISTTEGLRHSFGKTIIGQAKSDYWVDVVAKCVDKDAADGLDAYVVEREAEKTGRMMLCLSMFPPKN