NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233433_10012924

Scaffold Ga0233433_10012924


Overview

Basic Information
Taxon OID3300022931 Open in IMG/M
Scaffold IDGa0233433_10012924 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)5335
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004537Metagenome / Metatranscriptome434Y
F005848Metagenome / Metatranscriptome388Y
F032859Metagenome179Y
F056893Metagenome137Y
F094795Metagenome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0233433_1001292412F094795N/AMKSNEVFILGGALLAAIVLFKGQAASSTSGSVPFISPFLGMLGKAETKAIDTLGSNIQTLQSVKESNLGIAQSILDQERSLADVKISQIQTELDKTQGYISQQQKIGASAGFASLAPNQWSGTNLLSKFDRTFSQLSKVWTGEKGPLSGVSVFPDVKLLLTQSNRDIIAQQASYETAQENIGKASEMVQRQQGEIDRLNEEYQTRFGSLSRYG
Ga0233433_100129243F056893N/AMKKHTGITKVHKTLTMPISFYALVEQIRSKQGLDTAEEAINVSVMHLARKIGLEA
Ga0233433_100129247F032859GAGGMSFGGGGSGGSSTVAAHTHNSALSGDGGSLSSDLTQLDDNLLNIRIWLGI
Ga0233433_100129248F004537AGGAGMPFSNNIVNNYQLNSGTVPLLYPVRVICAAGATTGISFPDQFLGRAISLKISNNDSANAASYDYNLNGQFQNLAASNFSTIDNTVVNYLTVTAGAAGTVLVEAQVLPASRSEIPIEVQV
Ga0233433_100129249F005848AGGAGMALPVQRTYTATIAALNAPVFMVDQQTLQNNFLTLTPNVLQDCVNLVDPAATQLLQYTLVKNGNATSVRAFSSAISATTSGRVPIGPVSMSSGSYQWQAVQTAGVLFNGSILVRYGSPLN

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