Scaffold Ga0233433_10000914

Overview

Basic Information

• Taxon OID: 3300022931
• Scaffold ID: Ga0233433_10000914
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 30195
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (73.77%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F003953	Metagenome / Metatranscriptome	460	Y
F005019	Metagenome	415	Y
F005537	Metagenome / Metatranscriptome	397	Y
F006528	Metagenome / Metatranscriptome	371	Y
F008307	Metagenome / Metatranscriptome	335	Y
F066150	Metagenome	127	Y
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_1000091417	F066150	GAGG	MKILSNYQLKDMGQPIKETSCWLFFEKGKIAKHTIESFHFKDEIQRFRAELSFNNHKPINNTIN
Ga0233433_1000091420	F006528	N/A	MKEKDKLLIKLNIERLAIQTFKNIIEGSRSINGVTWNRIKNHKRKEQIECLKQLSL
Ga0233433_1000091422	F005019	AGG	MSDKKNLFGDVRQCIKCGMNADIVEKGKDYCAECWFKYFSGESIEEYEKRVKQLDQARKDKNEKSI
Ga0233433_1000091424	F002586	AGGAG	MIKVKLEANEVEMAYNTAQKRFIGNLRMGKGFSYGYNKNIKNQLFDGFLGALGEICYAKVTNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGNYFLIIKDNDKDFNFSIMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPLEEDVGQDKF
Ga0233433_1000091426	F003365	AGG	MKTIGKEWTRKEEGGTFTADHLSPSQLNKSLDIWFNDYVILTAKERKDLLGNLNMDIGAIVGQAVQDLIVHKLTFEEVMKGKK
Ga0233433_1000091430	F071633	N/A	LKVVFLILVIYTGDGNLKYEKIPFAYSLLPITCDEMYEKNVKYVENSNYKEGNGEVWVLTKYKNQNVMAHYCKDEKGNYVR
Ga0233433_1000091431	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGEFDHTSYVMSGILEKYLSVYNNCEVKVPLKLFGIFMIFLKLWRVMQSENYKKDSFDDINGYAELLRRLVINEQEKR
Ga0233433_1000091433	F008307	AGCAG	MVKVLKRSSLELAVDFEEIFDGASVEEAAQKAHSQKMPSEFAKANITDNKLISANIKIIGEENDELKK
Ga0233433_1000091456	F003953	AGGAGG	MDKIKKVIYDIKTDIDNNTSKYIIILGILFVISIIS