NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233433_10000217

Scaffold Ga0233433_10000217


Overview

Basic Information
Taxon OID3300022931 Open in IMG/M
Scaffold IDGa0233433_10000217 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)66157
Total Scaffold Genes77 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (37.66%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011190Metagenome / Metatranscriptome294Y
F042625Metagenome / Metatranscriptome158Y
F059350Metagenome / Metatranscriptome134N
F068714Metagenome124N
F078539Metagenome116Y
F091752Metagenome / Metatranscriptome107N
F098044Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0233433_1000021711F011190N/AMCELIMNFFRNLKKSFDGKDRLRNINQCMTCGKPSFFNSCLKCETSDAYEGWEKK
Ga0233433_1000021750F059350N/AMNDNTEKGVCYYETKQVWCTLHTHESIQDIVSTILHESLHNALALDVEKTDKREMNVSESMDIEQEHELLKRAIWSFNDWI
Ga0233433_1000021768F091752N/AMSQILEQQTEFLPENIQWLGLGNKYLECQYEITDNWGTKGLDRKDSYDANFQNEYDFVLDNMKLRG
Ga0233433_100002177F068714N/AMKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADAVVKSFTDTNSLYEIFDKYNNNKYNIQLLKGVLEKHGDRIRILPSGFVIDDIFLVDRTGVCWIWNSDKQEADRTHRTNLGSGAVCIVVDKTQRLKLKTSNGLVEIDEMGYIILSKIEFLMDPNLNDTVFTHQIPKKVLKILERNKAENLV
Ga0233433_1000021771F078539N/AMVKPLTDRENFIVASVIMVVSNEMKKVDRKTRQNILQFIREERYPGVTDQDWKEVAAGIDNHKKDVFGLMVKMFHESSSKPDMFAKKSIAELDTSMKGEIDDIDFDELKEIVDSSDDPKLREYYLTMKQLKRDFDDERG
Ga0233433_1000021774F098044GGAMHTSTTSTNEQAILGVNTTFDSMLAIEALILSNPMMNELKDIGKLTKTSLVKMALMEFISTPVSSRKLRRLFNAARDDDKFRAVMQGGQLE
Ga0233433_1000021776F042625AGGAGGMTPKAEKDALWKDLKLQWSFLKRDSGADEVKKGEAKKRINEIQESLKLEKTNWDAPRQGAPGSHLTNAGAAASPSNNALVEKILGTLLDMKRELNEDHATLSRKLTTLEEKVLSGACNCAPPAETPLD

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