Scaffold Ga0233433_10000217

Overview

Basic Information

• Taxon OID: 3300022931
• Scaffold ID: Ga0233433_10000217
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 66157
• Total Scaffold Genes: 77
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (37.66%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 100

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F042625	Metagenome / Metatranscriptome	158	Y
F059350	Metagenome / Metatranscriptome	134	N
F068714	Metagenome	124	N
F078539	Metagenome	116	Y
F091752	Metagenome / Metatranscriptome	107	N
F098044	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233433_1000021711	F011190	N/A	MCELIMNFFRNLKKSFDGKDRLRNINQCMTCGKPSFFNSCLKCETSDAYEGWEKK
Ga0233433_1000021750	F059350	N/A	MNDNTEKGVCYYETKQVWCTLHTHESIQDIVSTILHESLHNALALDVEKTDKREMNVSESMDIEQEHELLKRAIWSFNDWI
Ga0233433_1000021768	F091752	N/A	MSQILEQQTEFLPENIQWLGLGNKYLECQYEITDNWGTKGLDRKDSYDANFQNEYDFVLDNMKLRG
Ga0233433_100002177	F068714	N/A	MKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADAVVKSFTDTNSLYEIFDKYNNNKYNIQLLKGVLEKHGDRIRILPSGFVIDDIFLVDRTGVCWIWNSDKQEADRTHRTNLGSGAVCIVVDKTQRLKLKTSNGLVEIDEMGYIILSKIEFLMDPNLNDTVFTHQIPKKVLKILERNKAENLV
Ga0233433_1000021771	F078539	N/A	MVKPLTDRENFIVASVIMVVSNEMKKVDRKTRQNILQFIREERYPGVTDQDWKEVAAGIDNHKKDVFGLMVKMFHESSSKPDMFAKKSIAELDTSMKGEIDDIDFDELKEIVDSSDDPKLREYYLTMKQLKRDFDDERG
Ga0233433_1000021774	F098044	GGA	MHTSTTSTNEQAILGVNTTFDSMLAIEALILSNPMMNELKDIGKLTKTSLVKMALMEFISTPVSSRKLRRLFNAARDDDKFRAVMQGGQLE
Ga0233433_1000021776	F042625	AGGAGG	MTPKAEKDALWKDLKLQWSFLKRDSGADEVKKGEAKKRINEIQESLKLEKTNWDAPRQGAPGSHLTNAGAAASPSNNALVEKILGTLLDMKRELNEDHATLSRKLTTLEEKVLSGACNCAPPAETPLD