NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255769_10096203

Scaffold Ga0255769_10096203


Overview

Basic Information
Taxon OID3300022927 Open in IMG/M
Scaffold IDGa0255769_10096203 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1526
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F044531Metagenome / Metatranscriptome154Y
F045110Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0255769_100962031F044531N/AEDTHITDGNKELSTAEIGAGFWLCGFDRDGTCFEMTKISRSMAKDFMFDYGNYKLKDLDVTDFGVATYYWNEETCDGGILKVH
Ga0255769_100962032F045110GGAGMQKLNKKTVNAIAHNLIVDEAIQTAWAFVTNMQVNNEFEYAFCNSATGDYCDTLWHTTQNVKLGQSMDLIDAKDMADTAYDNFMCAFEDVNLAEITVEDVYKALDSISGDTAMRENYYMELRTHFKNFVESNTQYDLVAHPKWKGEYTLVSKHTPKQKEKLVRDYLNKYDAWEHIELNNDLVWA

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