NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255779_1009833

Scaffold Ga0255779_1009833


Overview

Basic Information
Taxon OID3300022922 Open in IMG/M
Scaffold IDGa0255779_1009833 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8051
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043613Metagenome / Metatranscriptome156N
F084834Metagenome112N

Sequences

Protein IDFamilyRBSSequence
Ga0255779_100983311F084834AGGMANPAKGAISQLGERVIDTSKGFFEAIRDAFGRESAGNVQELQTQVRTMPSVPEPTVDNAPLMAVHNTSLKGILAANEIGGIPGVSIGISDPANLQNFGEISLIMNPNKLNPNMNIYPTDAYTGRQPKGEVRIVNPKQFKERLKADVNLGHMADYAAIYLNKGDPEEADYTLKVINAAIDNNLVNSKDFNNIEELFEESRRSLKSDQNNMNFLNQYDGLKEYADVRRLLPPKDPYYDDGSRRPDRPYTAQTVLKAMRQGDYGPMYMPASEEHAQNYAGAFRAATSRPFKSIDEVKDARGQIFVEERDRTDFRTDPLEDFFDQFHKVKYSLIDDLTNKFKKTEIRTRRSRNEDGEFVTTQEPITRMMGVDTANELLLALGRNDADIARTAAVSEGFVSMDDIPALRDAVNRVGEIMQNAPTKYFEAKPNATMSLSDFDTALVPRHLTENEEVMRIFRENNLPVSTYTDFGPNLDEYREGVMRQMKENLFSVPLVGTVGYGALQGVGDGNGESGS
Ga0255779_100983316F043613N/AASDIEKVREYLFAPNRGEARKAFSEELAKPRSMKLGFPDQASVRAAISVPDMLGMGSGDAAGRLISQIDYNAPINPVSNHTTYPAGLQRVEGTPVYRMADESGNFRDVPTSFFFRDFYNDRIIDGVVPPEATTIRSMELRQATQPATKELNDIIQEYLYQTDNTRRGYPYNR
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