Scaffold Ga0233426_10009996

Overview

Basic Information

• Taxon OID: 3300022920
• Scaffold ID: Ga0233426_10009996
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 6028
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y
F023615	Metagenome / Metatranscriptome	209	Y
F039679	Metagenome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233426_100099965	F039679	AGAAGG	MSAKNSHLTIRSDLLEEDADISVPVRFLDYQEDDYVRDSATLNIDCEYSTDGEQLDDMAGYNIIVRITDSSKKDKYNNPWKDRLAFAISADFDWN
Ga0233426_100099967	F007770	N/A	MSGEGLTTSFRRTTQTTKSNKQLLREFQNIIYASRVTAHMKWYGEAESVQLIEHGDEELPKFQQEYVAIKDTFEFYISVRESWYKDADLYESHEVEDSFVSLARKFANDNALMYFPEGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICDVWYRYGIMKLQAFDKKVESELWQDAKTEIKQLMEHKYEK
Ga0233426_100099968	F016956	AGCAG	MEQYQIKIQKDYKMINTIETWQAPKKVQLAIIDLAITHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYVDYNIYCGDDWCVLKQDGSGEYEFTDPSTWSWGVSCYAVDPPTKENKYHQIDTGREQYLFSYNNSYGNFEVEFENE
Ga0233426_100099969	F023615	N/A	MNRFELEDAMSNLSLVGEDIETMIYAIGDCPIKHTEDQLLNMLIGMKQLHDTRYQKMWDTFEQLIKNGTISDKNTEGL