NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233426_10001718

Scaffold Ga0233426_10001718


Overview

Basic Information
Taxon OID3300022920 Open in IMG/M
Scaffold IDGa0233426_10001718 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)19404
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (19.35%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)48.5847Long. (o)-123.5008Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006896Metagenome / Metatranscriptome362Y
F007114Metagenome / Metatranscriptome357Y
F024892Metagenome / Metatranscriptome204Y
F067737Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0233426_1000171811F006896N/AMANEIYAVSWWGSPVEDGWGDIYYNLAFPSEVPSLLKSLESRSAYYENATCTTATLTDFENIEL
Ga0233426_100017182F007114GGAMESTTKINDSAWEKLKKQIEYHLEQDSNLTDIRINYQVKIPARGTRNYLGLNVKIDE
Ga0233426_1000171824F067737N/AMEGENLKLALKEVGKLIKKNLKQAAKDDGFKASGKLDRSFKYRVEDNELYIFGEQYANALSDGISTGGGSDEEGFKNLQSNIIKWAKIKGIRPQIRDKKGRFTKVSDRAWKSLGYVLARSIRQKGISERFGYKGSGFIQAVQEQTREQIKTILKEGYRKDILLSLNKLKSIN
Ga0233426_100017184F024892N/AMSLRKVHKRKKESFSLHRVEYTDTYTEEMDCEGLAVLKWSMFDSPDKLGSGKYFMESEPVFILDEVFRKERLSGFILRGYVSKTYGDKIAIPSNSGHRVGKSIKFKCINKAKRLKLIRGLIQYGIERINVSNEWIYFDTDNYLKEQEFVLF
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