NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0247790_10008589

Scaffold Ga0247790_10008589


Overview

Basic Information
Taxon OID3300022915 Open in IMG/M
Scaffold IDGa0247790_10008589 Open in IMG/M
Source Dataset NameSoil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2041
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.3Long. (o)-89.38Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014856Metagenome / Metatranscriptome259Y
F018741Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0247790_100085891F018741GGCGGVRGWETSERVLESGGFESRQRVLVDVPVVDASASGARTLGVTYWRTVERFTRGTIRATWSGDGGRLKLLGGATLLSFGTAQLAFGADEVHCRH
Ga0247790_100085893F014856AGGMSVEPYRQAVQDEVMTTALLRAAADLLDDLVDRLLGTDERVVTAAQGKALIASDDGMEEVADRVQRFVAVATPTVRVLARGARFTRVPWVLVASTAVSLTTTVRAGVREVRVIGSLLAYRLEQATGAPADPALVKKLALELYLAPKRTPDVARLDLPFSVLARKWLLRGIFGRDTRKWADRALDAAERLDVERVLETRRAASAAHSRPSTDPETTS

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.