Scaffold Ga0247774_1001645

Overview

Basic Information

• Taxon OID: 3300022903
• Scaffold ID: Ga0247774_1001645
• Source Dataset Name: Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L001-104B-6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11187
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038520	Metagenome / Metatranscriptome	165	Y
F042091	Metagenome / Metatranscriptome	159	N
F042710	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247774_100164515	F042091	GGAG	MTFSDGCPGGRSQLFTFKAKETITVDRPTLEHIFALLNGCSANFKYLCDNDIFVFATKNYLASLDNPESGKALNLLGVWTDTWPDASEELGDGLDEAVQSIKFILAATAGGRND
Ga0247774_10016458	F042710	GGAG	MAENSGNNCERSQIFTASSAQECRYVDVLKARAQELGLDSNCVGDKRKRETWETLLDSYGEAKPVKPQFVVKPNQP
Ga0247774_10016459	F038520	N/A	MKHKRSKHGGKRLGSGRPHKWQGGATKLVRIPISYVEQILRVVDYMDANEGRLPTGIAFHTEGENFTMPGCDPSSELPYPDFDGYNERYRNSTWNR