Scaffold Ga0233429_1083960

Overview

Basic Information

• Taxon OID: 3300022902
• Scaffold ID: Ga0233429_1083960
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 1338
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025387	Metagenome / Metatranscriptome	202	Y
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233429_10839603	F025387	GGA	MKRIEKVGEMLVRVITYPIRATIGVCQCIHKSTPDTLDDCMPFEIKKKEEKDGNKTTS
Ga0233429_10839604	F050676	GGAGG	METKLPVKSRVADKYQPMLTYYAELIGLCHETVAKTQSLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEVAEKLETISKTNEQRSHVA
Ga0233429_10839605	F054358	AGGAG	MSSSKTPIRQDEKDYLDHFIETKYDDRKNILKTEMQDTIDKEAEDNFEAFKDKLKINKMHDDVKVLYDDHAKFANEMDSIL