Scaffold Ga0233429_1003959

Overview

Basic Information

• Taxon OID: 3300022902
• Scaffold ID: Ga0233429_1003959
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 13487
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (83.67%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F016324	Metagenome	248	Y
F037424	Metagenome	168	Y
F053548	Metagenome	141	Y
F086310	Metagenome	111	Y
F087780	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0233429_100395911	F037424	AGGAG	MSWSGTVTCSHCYQKGHNKRKCEQLTEQIKDQYLGAASMAEQERAAGNDGDAMWYEERAEHRRQRYMKRTKIDLATGEKVKNKTAKAERMKNVTCGYCADRGHTRRTCEVVKRDKLVFIEQSRRVRRGVLADARETGIGVGSMIPIRTSGYNNAGEWGTHTSLRYVKSVDWNTVTANRAGLWVYHIIAGKLGAANQSRWTSRDKILNLRENFNEACSYAELNGQPEPTASLIPSLDPPDGWLGCAPSTIDVASHFPTKGNRHQKMRAHDYRWPSGVTAEVIRDLGFEEHWKGQL
Ga0233429_100395912	F086310	GAGG	MQVGDLVKHFLTEQIGIVVDISCNRDSRNIAPVQVMWTTQGESLFGPGHQEWCGEKSLEHLTTA
Ga0233429_100395932	F087780	GGAG	MKLGDLVKVSFGPNEKPITGIFIEDNTYATALDKDGWTVITHAHVLWEGEVYSTPLNQLEILNECG
Ga0233429_100395937	F053548	GGA	MKDSGAPSIGDLVIALYDELRDISCVGLVMETKGIECKIQWSSESNPIGWWPRSKLKVVSAA
Ga0233429_100395944	F005547	AGGTGG	MKVWVMQGSYEGEMFSSVHMTQKGCALACISDIIEFHGIDDDETALSVIENSYHGETAEEIAADKRDLEWDQEKLKEMTSEQLWKVFSDWCEISWDRMGDRSYNLDSHQVEIQA
Ga0233429_10039599	F016324	N/A	MIGDIVRLSGPGGMGRQYKRVHGVGIVVLIAKPDDRRIEYEVKWLKSDERMRFNEEDLIIISDVDRQT