Basic Information | |
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Taxon OID | 3300022901 Open in IMG/M |
Scaffold ID | Ga0247788_1010493 Open in IMG/M |
Source Dataset Name | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1548 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts) |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.3 | Long. (o) | -89.38 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F041481 | Metagenome | 160 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247788_10104932 | F041481 | GGA | MMMCGPFRHVSASEREHCLDPVPPAISSQDLSYCLKVQRQTIMRCRVSFLVVFSITLLSLAMPAFPATAPSTYSGYTGTDPKPIPSPPPVLGPMNSILTDPTFGSRILRVTDSKTAGGASLISEDAGYFRTWNADSTAIKLMTTTGKSWWVEFDPVNFKVGDGSSRPTLHQLNFNYKWEWSAVDPDVLYFLNGNQLSKYSKSAEVVTHLGGPPSGEPVTYHVAVVGQDSWVCSAAGAGAQGTYTKLFCLNPNSPSQSKFIDIANRTINGISQVDSNWPTGQKIGIHSIFGSAGGTWLGVIFHGQSWGKGVAVLNLATNSWSLATGVLHQSGHPCLGHGRYVNGSGSTNGKDSRGAILRDPDHLMDSSRQKFLMQPELTIGWHDAEHSSWFNAS |
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