Scaffold Ga0247788_1003929

Overview

Basic Information

• Taxon OID: 3300022901
• Scaffold ID: Ga0247788_1003929
• Source Dataset Name: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2374
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.3
  • Long. (^o): -89.38
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081905	Metagenome	114	Y
F094823	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0247788_10039291	F081905	GAGG	MAILTGRYGQVKWDQAGVTAVPIISLNAWTGDFKTEFEDVTCFQDTNRVYVPGLRNSEGSLAGFWNSQELALFKAAEATTPGLLELVPNSTEPTYAWSGLAYLDASIDASLQAPKISGNWKAA
Ga0247788_10039293	F094823	GGTGG	MARGDWRHVVTFQNPGPAGTWIDLDPATWMVSLSQTTGDDIGVFVEPVAGTPISSATYLVRGDFHPGVTTKTRMLLGSQTFAITSVENIDMRGVEMACHAVPLVM