Scaffold Ga0247778

Basic Information
Taxon OID	3300022894 Open in IMG/M
Scaffold ID	Ga0247778_1000010 Open in IMG/M
Source Dataset Name	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	363827
Total Scaffold Genes	343 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	250 (72.89%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F046467	Metagenome / Metatranscriptome	151	N
F056846	Metagenome / Metatranscriptome	137	Y
F065927	Metagenome	127	Y
F076755	Metagenome / Metatranscriptome	117	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

151

Metagenome / Metatranscriptome

137

Metagenome

127

Metagenome / Metatranscriptome

117

Protein ID	Family	RBS	Sequence
Ga0247778_1000010139	F046467	AGGGGG	MAQNRTRLFPSWVTWGTLENVSDLRDPDRDPDHLLAPERLIELENAAEPARQRLSELPAPALELVQAWLAAELSVARERALEVADFEFAECVCEMEQRLRFPGSFLRDAKASLRIQAVLGARAQFRVIQGGG
Ga0247778_1000010140	F065927	GAGG	MDSNSRPVLKSIESSPIPSIQALDHFVTSGGMRVSYYALALDEVPADFFADPDGTWTYELLSRAAGFASHSGVAIGALRAEFNGHPEGAAVVTLNALTRPYVAIVECPIAYQYLEQTEESASSAA
Ga0247778_1000010205	F076755	GGA	MQAVVKGMVQVHSVTYRIVRVRAGQYDVVRLLDDVRVGAFSLGTQREAIIEGDAPDVIREVARAALQGGRTTWAPRRLLA
Ga0247778_1000010286	F056846	N/A	MTDAPSPPQEIVEVIDEERIVPRGTAQVNWFVRLNDAWVHVSAWPGARSERLNAGAGTVWQSRTEIDVPRGAQLMRVESRPSSYARESPLEYLTRGAPSKSRKLRRNYYLVGRSGDLIATADGPE

Protein ID

Family

RBS

Sequence

Ga0247778_1000010139

AGGGGG

MAQNRTRLFPSWVTWGTLENVSDLRDPDRDPDHLLAPERLIELENAAEPARQRLSELPAPALELVQAWLAAELSVARERALEVADFEFAECVCEMEQRLRFPGSFLRDAKASLRIQAVLGARAQFRVIQGGG

Ga0247778_1000010140

GAGG

MDSNSRPVLKSIESSPIPSIQALDHFVTSGGMRVSYYALALDEVPADFFADPDGTWTYELLSRAAGFASHSGVAIGALRAEFNGHPEGAAVVTLNALTRPYVAIVECPIAYQYLEQTEESASSAA

Ga0247778_1000010205

GGA

MQAVVKGMVQVHSVTYRIVRVRAGQYDVVRLLDDVRVGAFSLGTQREAIIEGDAPDVIREVARAALQGGRTTWAPRRLLA

Ga0247778_1000010286

N/A

MTDAPSPPQEIVEVIDEERIVPRGTAQVNWFVRLNDAWVHVSAWPGARSERLNAGAGTVWQSRTEIDVPRGAQLMRVESRPSSYARESPLEYLTRGAPSKSRKLRRNYYLVGRSGDLIATADGPE

NMPFamsDB