Scaffold Ga0233428_1032959

Overview

Basic Information

• Taxon OID: 3300022888
• Scaffold ID: Ga0233428_1032959
• Source Dataset Name: Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_120_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 48.5847
  • Long. (^o): -123.5008
  • Depth (m): 120

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000659	Metagenome / Metatranscriptome	952	Y
F032311	Metagenome / Metatranscriptome	180	Y
F056063	Metagenome	138	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233428_10329591	F032311	N/A	NKPAFTFPSPNSDMKIQVFLRKMTPSKGQPKGMMAFNYQFEDK
Ga0233428_10329593	F000659	GAG	MKTFSQYLEEANSKYIVSKNPSDKKWYVMGHVGNNKWMPVSNEFKNKAQAQKWAKSQDKVDIAARGEISDA
Ga0233428_10329596	F076495	N/A	MEQITKMKRFKEYLNEVRFQKVTVKDKSGKSHTQQTRIRPDTTHVAILHYDDIPATDLSSAVIAHTDLSFGSIDSLDKIIVHAKKKFDLKKVEIQKLDKKYL
Ga0233428_10329597	F056063	N/A	MKRFKEYLKEARGTSLSGLLFLPRIGYYDQLMIPISSSMFKRIWPDTLRATVFHTTDGDGVRNIAKLQGKKKQISAFFSMFSRYMEVGVATQGGVHSV